Helpful Functions for Cleaning Surveillance Data • cstidy

Overview

cstidy contains helpful functions for the cleaning and manipulation of surveillance data, especially with regards to the creation and validation of panel data from individual level surveillance data.

Read the introduction vignette here or run help(package="cstidy").

csverse

The csverse is a set of R packages developed to help solve problems that frequently occur when performing disease surveillance.

If you want to install the dev versions (or access packages that haven’t been released on CRAN), run usethis::edit_r_profile() to edit your .Rprofile.

Then write in:

options(
  repos = structure(c(
    CSVERSE = "https://www.csids.no/drat/",
    CRAN    = "https://cran.rstudio.com"
  ))
)

Save the file and restart R.

You can now install csverse packages from our drat repository.

install.packages("cstidy")